Publications.
latest preprints
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Y. Liu, J. Chuah, M. Unser, J. Dong
A global inverse-problem approach to quantitative photo-switching optoacoustic mesoscopy
(2025)
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Z. Hu, F. Mammadova, J. Tachella, M. Unser, J. Dong
Structured Random Phase Retrieval using Optical Diffusers
(2025)
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F. Hitzelhammer, J. Dong, U. Hohenester, T. Juffmann
Fundamental Bounds for Off-Axis Illumination in Interferometric and Rotating Coherent Scattering Microscopy
(2025)
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S. Ducotterd, Z. Hu, M. Unser, J. Dong
Undersampled Phase Retrieval with Image Priors
(2025)
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G.A. D'Inverno, Z. Hu, M. Unser, G. Rozza, J. Dong
Revisiting Deep Information Propagation: Fractal Frontier and Finite-size Effects
(2025)
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J. Tachella, M. Terris, S. Hurault, A. Wang, D. Chen, M.-H. Nguyen, M. Song, T. Davies, L. Davy, J. Dong, et al.
Deepinverse: A python package for solving imaging inverse problems with deep learning
(2025)
journal articles and conference papers
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T. Juffmann, S. Nimmrichter, F. Balzarotti, J. Dong
(Quantum) Fisher Information in Localization Microscopy
Photoniques (2025)
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M. Zach, K. Shen, R. Cao, M. Unser, L. Waller, J. Dong
Perturbative Fourier Ptychographic Microscopy for Fast Quantitative Phase Imaging
Optics Express (2025)
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[34]
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Y. Liu, V. Stergiopoulou, J. Chuah, E. Bezzam, G.-J. Both, M. Unser, D. Sage, J. Dong
Revisiting PSF models: unifying framework and high-performance implementation
Journal of Microscopy (2025)
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[33]
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Z. Hu, J. Tachella, M. Unser, J. Dong
Structured Random Model for Fast and Robust Phase Retrieval
IEEE ICASSP (2025)
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[32]
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G.A. D'Inverno, J. Dong
Comparison of Reservoir Computing topologies using the Recurrent Kernel approach
Neurocomputing (2025)
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[31]
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Y. Liu, J. Chuah, A.C. Stiel, M. Unser, J. Dong
Model-based temporal unmixing towards quantitative photo-switching optoacoustic tomography
Optics Express (2025)
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[30]
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M. Allain, S. Aslan, W. Coene, S. Dirksen, J. Dong, J. Flamant, M. Iwen, F. Krahmer, T. van Leeuwen, et al.
Phasebook: a survey of selected open problems in phase retrieval
Sampling Theory, Signal Processing, and Data Analysis (2025)
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[29]
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S. Hélage, C. Laponche, M. Homps, J. Dong, L. Rivière, F. Préaux, P.-A. Just, N. Aflak, J.-N. Buy, E. Dion
The Hôtel-Dieu MRI Classification of Uterosacral Ligament Involvement in Endometriosis: A Pictorial Guide to Clinical Use
Diagnostics (2025)
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Y. Liu, J. Dong, J.A. Maya, F. Balzarotti, M. Unser
Point-spread-function engineering in MINFLUX: optimality of donut and half-moon excitation patterns
Optics Letters (2024)
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[27]
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S. Lin, Y. Wang, J. Dong, S. Ni
Detection and Positive Reconstruction of Cognitive Distortion sentences: Mandarin Dataset and Evaluation
Association of Computational Linguistics (2024)
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[26]
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A. Boquet-Pujadas, J. Saidi, M. Vicente, L. Paolozzi, J. Dong, et al.
A Silicon-Pixel Paradigm for PET
IEEE Transactions on Radiation and Plasma Medical Sciences (2024)
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J. Dong, E. Börve, M. Rafayelyan, M. Unser
Asymptotic Stability in Reservoir Computing
IEEE International Joint Conference on Neural Networks (2022)
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[24]
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S. Zhao, B. Rauer, L. Valzania, J. Dong, R. Liu, F. Li, S. Gigan, H.B. de Aguiar
Single-pixel transmission matrix recovery via two-photon fluorescence
Science Advances (2024)
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[23]
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J. Dong, L. Valzania, A. Maillard, T. Pham, S. Gigan, M. Unser
Phase retrieval: From computational imaging to machine learning
IEEE Signal Processing Magazine (2023)
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[22]
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Y. Liu, J. Dong, T. Pham, F. Marelli, M. Unser
Mechanical artifacts in optical projection tomography: classification and automatic calibration
Optics Continuum (2022)
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[21]
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A. d'Arco, F. Xia, A. Boniface, J. Dong, S. Gigan
Physics-based neural network for non-invasive control of coherent light in scattering media
Optics Express (2022)
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[20]
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Y. Liu, J. Dong, C. Schmidt, A. Boquet-Pujadas, J. Extermann, M. Unser
Artifacts in optical projection tomography due to refractive-index mismatch: model and correction
Optics Letters (2022)
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[19]
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P. Bohra, T. Pham, J. Dong, M. Unser
Bayesian inversion for nonlinear imaging models using deep generative priors
IEEE Transactions on Computational Imaging (2022)
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[18]
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J. Dong, D. Maestre, C. Conrad-Billroth, T. Juffmann
Fundamental bounds on the precision of iSCAT, COBRI and dark-field microscopy for 3D localization and mass photometry
Journal of Physics D: Applied Physics (2021)
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[17]
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J. Dong, L. Valzania, S. Gigan
Accelerating ptychographic reconstructions using spectral initializations
Optics Letters (2021)
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[16]
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J. Dong, D. Bouchet, D. Maestre, T. Juffmann
Fundamental bounds on the precision of classical phase microscopes
Physical Review Applied (2021)
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[15]
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A. Boniface, J. Dong, S. Gigan
Non-invasive focusing and imaging in scattering media with a fluorescence-based transmission matrix
Nature Communications (2020)
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[14]
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J. Dong
A computational tour on random matrices: imaging through complex media and optical computing
PhD Thesis (2020)
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J. Dong, R. Ohana, M. Rafayelyan, F. Krzakala
Reservoir Computing meets Recurrent Kernels and Structured Transforms
Advances in Neural Information Processing Systems (Oral, top 5.5%, 2020)
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[12]
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R. Ohana, J. Wacker, J. Dong, S. Marmin, F. Krzakala, M. Filippone, L. Daudet
Kernel computations from large-scale random features obtained by optical processing units
IEEE ICASSP (2020)
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[11]
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T. Wu, J. Dong, S. Gigan
Non-invasive single-shot recovery of a point-spread function of a memory effect based scattering imaging system
Optics Letters (2020)
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[10]
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M. Rafayelyan, J. Dong, Y. Tan, F. Krzakala, S. Gigan
Large-scale optical reservoir computing for spatiotemporal chaotic systems prediction
Physical Review X (2020)
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[9]
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A. Boniface, B. Blochet, J. Dong, S. Gigan
Noninvasive light focusing in scattering media using speckle variance optimization
Optica (2019)
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[8]
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J. Dong, M. Rafayelyan, F. Krzakala, S. Gigan
Optical reservoir computing using multiple light scattering for chaotic systems prediction
IEEE Journal of Selected Topics in Quantum Electronics (2019)
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[7]
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J. Dong, F. Krzakala, S. Gigan
Spectral method for multiplexed phase retrieval and application in optical imaging in complex media
IEEE ICASSP (2019)
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[6]
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F. Soldevila, J. Dong, E. Tajahuerce, S. Gigan, H.B. de Aguiar
Fast compressive Raman bio-imaging via matrix completion
Optica (2019)
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[5]
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J. Dong, S. Gigan, F. Krzakala, G. Wainrib
Scaling up echo-state networks with multiple light scattering
IEEE Statistical Signal Processing Workshop (2018)
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[4]
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T. Wu, J. Dong, X. Shao, S. Gigan
Imaging through a thin scattering layer and jointly retrieving the point-spread-function using phase-diversity
Optics Express (2017)
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[3]
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A. Shanker, A. Wojdyla, G. Gunjala, J. Dong, M. Benk, A. Neureuther, K. Goldberg, L. Waller
Off-axis aberration estimation in an EUV microscope using natural speckle
Imaging Science and Applications (2016)
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L. Yeh, J. Dong, J. Zhong, L. Tian, M. Chen, G. Tang, M. Soltanolkotabi, L. Waller
Experimental robustness of Fourier ptychography phase retrieval algorithms
Optics Express (2015)